# R

### **R**

**R packages**

* [apply function in R](http://blog.fens.me/r-apply/)
* dplyr: [tutorial](http://rpubs.com/justmarkham/dplyr-tutorial); [github\_dplyr](http://dplyr.tidyverse.org/)
* reshape2: [An introduction](http://seananderson.ca/2013/10/19/reshape.html)
* ggplot2:
  * [ggplot2 gallery](http://www.ggplot2-exts.org/gallery/)
* lattice:
  * [基本功能查询](http://blog.csdn.net/yhb315279058/article/details/49429957)
  * [Lattice包中最常用的四种绘图: density,hist,box,x-y](http://xccds1977.blogspot.com/2011/09/lattice.html)
* ggvis()： [ggvis\_basic](http://ggvis.rstudio.com/ggvis-basics.html)

  **Other R packages:**
* [R/qtl](http://www.rqtl.org/)
* [CummeRbund](http://compbio.mit.edu/cummeRbund/)

**Learn R**

* [R cook book 相当于字典](http://www.cookbook-r.com)
* [R\_graphics](http://www.statmethods.net/graphs/index.html)
* [学习R语言，一篇文章让你从懵圈到入门](http://www.xueqing.tv/cms/article/198)（A list of common and useful R packages)
* [如何学习 R 语言？知乎](https://www.zhihu.com/question/21654166)
* [swirl （learn R in R）](http://swirlstats.com/)
* good R books:
  * 《ggplot2 Elegant Graphics for Data Analysis》
  * 《R Programming for Bioinformatics》

**Rmarkdown**

* Rmarkdown and knitr： [Rmarkdown 知乎 简介](https://zhuanlan.zhihu.com/p/24884324)
* [Rmarkdown cheat sheet PDF](https://www.rstudio.com/wp-content/uploads/2015/02/rmarkdown-cheatsheet.pdfPaperpile)
* [Roger Peng on YouTube](https://www.youtube.com/channel/UCZA0RbbSK1IXeeJysKYRWuQ)

  \*[R videos](https://www.youtube.com/playlist?list=PLjTlxb-wKvXPqyY3FZDO8GqIaWuEDy-Od)

  \*[Exploratory Data Analysis](https://www.youtube.com/playlist?list=PLjTlxb-wKvXPhZ7tQwlROtFjorSj9tUyZ)
